Goundla Srinivas: search on Z-Library

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1

Study of the dynamics of protein folding through minimalistic models

Goundla Srinivas, Biman Bagchi

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2003

Language:

english

File:

PDF, 497 KB

english, 2003

2

Foldability and the funnel of HP-36 protein sequence: Use of hydropathy scale in protein folding

Srinivas, Goundla, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 562 KB

english, 2002

3

Distribution of reaction times in diffusion controlled reactions in polymers

Goundla Srinivas, Biman Bagchi

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

4

FRET by FET and Dynamics of Polymer Folding

Srinivas, Goundla, Yethiraj, Arun, Bagchi, Biman

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 81 KB

english, 2001

5

Computational approaches to nanobiotechnology: probing the interaction of synthetic molecules with phospholipid bilayers via a coarse grain model

Srinivas, Goundla, Klein, Michael L

Journal:

Year:

2004

Language:

english

File:

PDF, 530 KB

english, 2004

6

Interfacial Fluctuations of Block Copolymers: A Coarse-Grain Molecular Dynamics Simulation Study

Srinivas, Goundla, Swope, William C., Pitera, Jed W.

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 713 KB

english, 2007

7

Time-dependent survival probability in diffusion-controlled reactions in a polymer chain: Beyond the Wilemski–Fixman theory

Srinivas, Goundla, Sebastian, K. L., Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 328 KB

english, 2002

8

The Enskog theory for classical vibrational energy relaxation in fluids with continuous potentials

Bagchi, Biman, Srinivas, Goundla, Miyazaki, Kunimasa

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 292 KB

english, 2001

9

Simulation of Diblock Copolymer Self-Assembly, Using a Coarse-Grain Model

Srinivas, Goundla, Shelley, John C., Nielsen, Steve O., Discher, Dennis E., Klein, Michael L.

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 1.37 MB

english, 2004

10

Coarse-Grain Model for Natural Cellulose Fibrils in Explicit Water

Srinivas, Goundla, Cheng, Xiaolin, Smith, Jeremy C.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 3.89 MB

english, 2014

11

Modeling Surfactant Adsorption on Hydrophobic Surfaces

Nielsen, Steve O., Srinivas, Goundla, Lopez, Carlos F., Klein, Michael L.

Journal:

Physical Review Letters

Year:

2005

Language:

english

File:

PDF, 296 KB

english, 2005

12

Distance and Orientation Dependence of Excitation Energy Transfer: From Molecular Systems to Metal Nanoparticles

Saini, Sangeeta, Srinivas, Goundla, Bagchi, Biman

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

13

Coarse grain models and the computer simulation of soft materials

Nielsen, Steve O, Lopez, Carlos F, Srinivas, Goundla, Klein, Michael L

Journal:

Journal of Physics Condensed Matter

Year:

2004

Language:

english

File:

PDF, 1.55 MB

english, 2004

14

Incorporating a hydrophobic solid into a coarse grain liquid framework: Graphite in an aqueous amphiphilic environment

Nielsen, Steven O., Srinivas, Goundla, Klein, Michael L.

Journal:

The Journal of Chemical Physics

Year:

2005

Language:

english

File:

PDF, 545 KB

english, 2005

15

Probing Membrane Insertion Activity of Antimicrobial Polymers via Coarse-Grain Molecular Dynamics

Lopez, Carlos F., Nielsen, Steven O., Srinivas, Goundla, DeGrado, William F., Klein, Michael L.

Journal:

Journal of Chemical Theory and Computation

Year:

2006

Language:

english

File:

PDF, 617 KB

english, 2006

16

A coarse grain model for n-alkanes parameterized from surface tension data

Nielsen, Steve O., Lopez, Carlos F., Srinivas, Goundla, Klein, Michael L.

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 438 KB

english, 2003

17

Intermittency, current flows, and short time diffusion in interacting finite sized one-dimensional fluids

Pal, Subrata, Srinivas, Goundla, Bhattacharyya, Sarika, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 394 KB

english, 2002

18

Soft Patchy Nanoparticles from Solution-Phase Self-Assembly of Binary Diblock Copolymers

Srinivas, Goundla, Pitera, Jed W.

Journal:

Year:

2008

Language:

english

File:

PDF, 984 KB

english, 2008

19

Molecular Modeling and SPRi Investigations of Interleukin 6 (IL6) Protein and DNA Aptamers

Rhinehardt, Kristen L., Vance, Stephen A., Mohan, Ram V., Sandros, Marinella, Srinivas, Goundla

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2017

Language:

english

File:

PDF, 6.12 MB

english, 2017

20

Molecular dynamics simulations of self-assembly and nanotube formation by amphiphilic molecules in aqueous solution: a coarse-grain approach

Srinivas, Goundla, Klein, Michael L

Journal:

Year:

2007

Language:

english

File:

PDF, 1.59 MB

english, 2007

21

Molecular Dynamics Simulations of Surfactant Self-Organization at a Solid−Liquid Interface

Srinivas, Goundla, Nielsen, Steven O., Moore, Preston B., Klein, Michael L.

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 713 KB

english, 2006

22

Nonideality in the composition dependence of viscosity in binary mixtures

Srinivas, Goundla, Mukherjee, Arnab, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 270 KB

english, 2001

23

Molecular Dynamics Simulation Analysis of Anti-MUC1 Aptamer and Mucin 1 Peptide Binding

Rhinehardt, Kristen L., Srinivas, Goundla, Mohan, Ram V.

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 4.91 MB

english, 2015

24

[IEEE 2015 2nd International Symposium on Physics and Technology of Sensors (ISPTS) - Pune, India (2015.3.7-2015.3.10)] 2015 2nd International Symposium on Physics and Technology of Sensors (ISPTS) - Analysis and understanding of aptamer and peptide molecular interactions: Application to mucin 1 (Muc1) aptasensor

Rhinehardt, Kristen, Mohan, Ram, Srinivas, Goundla, Kelkar, Ajit

Year:

2015

Language:

english

File:

PDF, 801 KB

english, 2015

25

Emerging applications of polymersomes in delivery: From molecular dynamics to shrinkage of tumors

Dennis E. Discher, Vanessa Ortiz, Goundla Srinivas, Michael L. Klein, Younghoon Kim, David Christian, Shenshen Cai, Peter Photos, Fariyal Ahmed

Journal:

Progress in Polymer Science

Year:

2007

Language:

english

File:

PDF, 1.45 MB

english, 2007

26

Coarse-grain molecular dynamics simulations of diblock copolymer surfactants interacting with a lipid bilayer

Srinivas *, Goundla, Klein, Michael L.

Journal:

Molecular Physics

Year:

2004

Language:

english

File:

PDF, 887 KB

english, 2004

27

Relaxation in binary mixtures: Non-ideality, heterogeneity and re-entrance

Arnab Mukherjee, Goundla Srinivas, Sarika Bhattacharyya, Biman Bagchi

Journal:

Journal of Chemical Sciences

Year:

2001

Language:

english

File:

PDF, 551 KB

english, 2001

28

Shrinkage of a Rapidly Growing Tumor by Drug-Loaded Polymersomes: pH-Triggered Release through Copolymer Degradation

Ahmed, Fariyal, Pakunlu, Refika I., Srinivas, Goundla, Brannan, Aaron, Bates, Frank, Klein, Michael L., Minko, Tamara, Discher, Dennis E.

Journal:

Molecular Pharmaceutics

Year:

2006

Language:

english

File:

PDF, 597 KB

english, 2006

29

Energy transfer efficiency distributions in polymers in solution during folding and unfolding

Srinivas, Goundla, Bagchi, Biman

Journal:

Year:

2002

Language:

english

File:

PDF, 487 KB

english, 2002

30

Reentrant Behavior of Relaxation Time with Viscosity at Varying Composition in Binary Mixtures

Mukherjee, Arnab, Srinivas, Goundla, Bagchi, Biman

Journal:

Physical Review Letters

Year:

2001

Language:

english

File:

PDF, 84 KB

english, 2001

31

Polymer Micelle Assisted Transport and Delivery of Model Hydrophilic Components inside a Biological Lipid Vesicle: A Coarse-Grain Simulation Study

Srinivas, Goundla, Mohan, Ram V., Kelkar, Ajit D.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.92 MB

english, 2013

32

Understanding the anomalous 1/t[sup 3] time dependence of velocity correlation function in one dimensional Lennard-Jones systems

Srinivas, Goundla, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 325 KB

english, 2000

33

Key Roles for Chain Flexibility in Block Copolymer Membranes that Contain Pores or Make Tubes

Srinivas, Goundla, Discher, Dennis E., Klein, Michael L.

Journal:

Year:

2005

Language:

english

File:

PDF, 529 KB

english, 2005

34

The Enskog theory for transport coefficients of simple fluids with continuous potentials

Miyazaki, Kunimasa, Srinivas, Goundla, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 359 KB

english, 2001

35

Erratum: “Nonexponentiality of time dependent survival probability and the fractional viscosity dependence of the rate in diffusion controlled reactions in a polymer chain” [J. Chem. Phys. 114, 9170 (2001)]

Srinivas, Goundla, Yethiraj, Arun, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 246 KB

english, 2001

36

Computer simulation and mode-coupling theory analysis of time-dependent diffusion in two dimensional Lennard–Jones fluids

Sarika Bhattacharyya, Goundla Srinivas, Biman Bagchi

Journal:

Physics Letters A

Year:

2000

Language:

english

File:

PDF, 138 KB

english, 2000

37

Membrane Bound Hydraphiles Facilitate Cation Translocation

Srinivas, Goundla, Lopez, Carlos F., Klein, Michael L.

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 348 KB

english, 2004

38

Self-assembly and properties of diblock copolymers by coarse-grain molecular dynamics

Srinivas, Goundla, Discher, Dennis E., Klein, Michael L.

Journal:

Nature Materials

Year:

2004

Language:

english

File:

PDF, 464 KB

english, 2004

39

A Solvent-Free Coarse Grain Model for Crystalline and Amorphous Cellulose Fibrils

Srinivas, Goundla, Cheng, Xiaolin, Smith, Jeremy C.

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 4.36 MB

english, 2011

40

Study of Pair Contact Formation among Hydrophobic Residues in a Model HP-36 Protein: Relationship between Contact Order Parameter and Rate of Folding and Collapse

Srinivas, Goundla, Bagchi, Biman

Journal:

Journal of Physical Chemistry B

Year:

2003

Language:

english

File:

PDF, 235 KB

english, 2003

41

Nonexponentiality of time dependent survival probability and the fractional viscosity dependence of the rate in diffusion controlled reactions in a polymer chain

Srinivas, Goundla, Yethiraj, Arun, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 360 KB

english, 2001

42

Detection of collapsed and ordered polymer structures by fluorescence resonance energy transfer in stiff homopolymers: Bimodality in the reaction efficiency distribution

Srinivas, Goundla, Bagchi, Biman

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 812 KB

english, 2002

43

Effect of Orientational Motion of Mobile Chromophores on the Dynamics of Förster Energy Transfer in Polymers

Srinivas, Goundla, Bagchi, Biman

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 111 KB

english, 2001

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